PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622796.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 431aa    MW: 48060.9 Da    PI: 9.6328
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-066890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F+r  nL+ H r H
  XP_013622796.1 68 FICEICNKGFKRDQNLQLHRRGH 90
                    89*******************88 PP

2zf-C2H210.80.0016175193523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg+ Fsrk+++ +H   +
  XP_013622796.1 175 DCGTIFSRKDSFITHRAFC 193
                     9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.74E-86790No hitNo description
Gene3DG3DSA:3.30.160.604.9E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8666890IPR007087Zinc finger, C2H2
SMARTSM003550.0116890IPR015880Zinc finger, C2H2-like
PfamPF121711.6E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM0035597110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.74E-8140165No hitNo description
SMARTSM00355190145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MIIPDDPHLL SFPSYVLHQE HITPNPNPNP NPTASKSNKR KRNLPGNPDP DAEVIALSPN  60
SLMTTNRFIC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT DKEQVKKKVY ICPEKTCVHH  120
DPGRALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVVSDW KAHSKICGTR EYRCDCGTIF  180
SRKDSFITHR AFCDALAEES ARFASVPPAA AAYLNNSSDA EVNLGNIKPN HQQRLLDCTS  240
SQLDRHGFNV NRNNINGFTG QSSTNQLPLA ANVFASSSSP SPHSASALLQ NLWQLQGQSY  300
QQLLLNKNNN NIIQNGMPNN QEDHDTIKRE LVINGSLFSS EARTSYNQNG GQEIASMSAT  360
ALLQMAAQMG SKRSSSSSNN GMAFGLMTSS IFNNKEMENK IKTKEVDERG FTRDFLGEGS  420
QNRPANIDGQ P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622796.10.0PREDICTED: protein indeterminate-domain 9 isoform X1
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLA0A0D3BHB40.0A0A0D3BHB4_BRAOL; Uncharacterized protein
STRINGBra038293.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-172C2H2-like zinc finger protein